Hayashi T., Hayashi H., and Iwai K. 1987. Tetrahymena histone HI. Isolation and amino acid sequence lacking the central hydrophobic domain conserved in other HI histones. J. Biochem. 102: 369-376.
Jahn C.L. and Klobutcher L.A. 2002. Genome remodeling in ciliated protozoa. Annu. Rev. Microbiol. 56: 489-520.
Jaraczewski J.W. and Jahn C.L. 1993. Elimination of Tec elements involves a novel excision process. Genes Dev. 7: 95-105.
Jessop-Murray H., Martin L.D., Gilley D., Preer J.R., and Polisky B. 1991. Permanent rescue of a non-Mendelian mutation of Paramecium by microinjection of specific DNA sequences. Genetics 129: 727-734.
Klobutcher L.A. 1999. Characterization of in vivo developmental chromosome fragmentation intermediates in E. crassus. Mol. Cell 4: 695-704.
Klobutcher L.A. and Herrick G. 1995. Consensus inverted terminal repeat sequence of Paramecium IESs: Resemblance to termini of Tel-related and Euplotes Tec transposons. Nucleic Acids Res. 23: 2006-2013.
Klobutcher L.A. and Herrick G. 1997. Developmental genome reorganization in ciliated protozoa: The transposon link. Prog. Nucleic Acid Res. Mol. Biol. 56: 1-62.
Klobutcher L.A., Turner L.R., and LaPlante J. 1993. Circular forms of developmentally excised DNA in Euplotes crassus have a heteroduplex junction. Genes Dev. 7: 84-94.
Kobayashi S. and Koizumi S. 1990. Characterization of non-Mendelian and Mendelian mutant strains by micronuclear transplantation in Paramecium tetraurelia. J. Protozool. 37: 489-492.
Koizumi S. and Kobayashi S. 1989. Microinjection of plasmid DNA encoding the A surface antigen of Paramecium tetraurelia restores the ability to regenerate a wild-type macronucleus. Mol. Cell. Biol. 9: 4398-4401.
Landweber L.F., Kuo T.C., and Curtis E.A. 2000. Evolution and assembly of an extremely scrambled gene. Proc. Natl. Acad. Sci. 97: 3298-3303.
Le Mouel A., Butler A., Caron F, and Meyer E. 2003. Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in Paramecia. Eukaryot. Cell 2: 1076-1090.
Lee S.R. and Collins K. 2006. Two classes of endogenous small RNAs in Tetrahymena thermophila. Genes Dev. 20: 28-33.
Liu Y., Mochizuki K., and Gorovsky M.A. 2004. Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena. Proc. Natl. Acad. Sci. 101: 1679-1684.
Liu Y., SongX., Gorovsky M.A., and Karrer K.M. 2005. Elimination of foreign DNA during somatic differentiation in Tetrahymena thermophila shows position effect and is dosage dependent. Eukaryot. Cell 4: 421-431.
Lu C., Tej S.S., Luo S., Haudenschild C.D., Meyers B.C., and Green P.J. 2005. Elucidation of the small RNA component of the transcriptome. Science 309: 1567-1569.
Madireddi M.T., Davis M., and Allis D. 1994. Identification of a novel polypeptide involved in the formation of DNA-containing vesicles during macronuclear development in Tetrahymena. Dev. Biol. 165: 418-431.
Madireddi M.T., Coyne R.S., Smothers J.F., Mickey K.M., Yao M.C, and Allis CD. 1996. Pddlp, a novel chromodomain-containing protein, links heterochromatin assembly and DNA elimination in Tetrahymena. Cell 87: 75-84.
Malone C.D., Anderson A.M., Motl J.A., Rexer C.H., and Chalker D.L. 2005. Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila. Mol. Cell. Biol. 25: 9151-9164.
Mattick J.S. 2004. RNA regulation: A new genetics? Nat. Rev. Genet. 5: 316-323.
Matzke M.A. and Birchler J.A. 2005. RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 6: 24-35.
Meyer E. 1992. Induction of specific macronuclear developmental mutations by microinjection of a cloned telomeric gene in Paramecium primaurelia. Genes Dev. 6: 211-222.
Meyer E. and Keller A.M. 1996. A Mendelian mutation affecting mating-type determination also affects developmental genomic rearrangements in Paramecium tetraurelia. Genetics 143: 191-202.
Meyer E., Butler A., Dubrana K., Duharcourt S., and Caron F. 1997. Sequence-specific epigenetic effects of the maternal somatic genome on developmental rearrangements of the zygotic genome in Paramecium primaurelia. Mol. Cell. Biol. 17: 3589-3599.
Meyers B.C., Vu T.H., Tej S.S., Ghazal H., Matvienko M., Agrawal V., Ning J., and Haudenschild C.D. 2004. Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing. Nat. Biotechnol. 22: 1006-1011.
Mizzen C.A., Dou Y., Liu Y., Cook R.G., Gorovsky M.A., and Allis C.D. 1999. Identification and mutation of phosphorylation sites in a linker histone. Phosphorylation of macronuclear HI is not essential for viability in Tetrahymena. J. Biol. Chem. 274: 14533-14536.
Mochizuki K. and Gorovsky M.A. 2004. Small RNAs in genome rearrangement in Tetrahymena. Curr. Opin. Genet. Dev. 14: 181-187.
Mochizuki K. and Gorovsky M.A. 2005. A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase. Genes Dev. 19: 77-89.
Mochizuki K., Fine N.A., Fujisawa T., and Gorovsky M.A. 2002. Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in Tetrahymena. Cell 110: 689-699.
Moreira-Leite F.F., SherwinX, Kohl L., and Gull K. 2001. A tiypano-some structure involved in transmitting cytoplasmic information during cell division. Science 294: 610-612.